The script should never have made it to production - too many bad ideas
Flint Marko - they want to make him sympathetic with this crap about how he will "steal to help his daughter" (as opposed to just trying to get her into St Jude, etc.) How Spiderman is a bully and tries to murder him, and he wakes up and talks about his daughter, etc..... Meanwhile, they show a scene where he murders an old man in cold blood - while another criminal begs him not to. hahaha. And Spiderman forgives him at the end...
This doesn't make any sense at all. He murders an old man in cold blood (SM's uncle) and now, to help his daughter, he isn't working 80 hours a week, but he is violently committing robberies. It makes no sense why anyone with any concept of reality would see him as sympathetic. It just comes across as awkward to most of the audience, and a few easy changes could have created a completely different mood.
Eddie Brock - Eddie begs Peter not to "expose" him, and Peter, in his black suit, is "cruel" to Brock by exposing him (or this is what we are supposed to think) The thing is ---Brock, as a journalist, had just fraudulently framed spiderman for a crime he did not commit. That's kind of a big deal, no photographer/journalist would let that slide, the black suit has nothing to do with that decision. (it did with the camera break maybe, but not here)
Mary Jane Saga - The only time I saw something more awkward in a superhero movie was the dreadful superman returns where louis lane has left superman and he is listening in on her conversations. S2 was the classic superhero love story, this was beyond terrible. There are a couple of classic arcs - (1) love interest doesn't know superheros identity; and (2) being married to superhero is like being married to a cop. What we had here, however, was just awkward. A woman is dating a superhero and is having eggs with her ex boyfriend..... ok....
Black Suit Peter -